{ "_id": "6a1f135fb401979e7341df7b", "Package": "TITAN2", "Type": "Package", "Title": "Threshold Indicator Taxa Analysis", "Version": "2.4.4", "Authors@R": "c(person(\"Matthew E.\", \"Baker\", email = \"mbaker@umbc.edu\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0001-5069-0204\")),\nperson(\"Ryan S.\", \"King\",email = \"Ryan_S_King@baylor.edu\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-3159-9816\")),\nperson(\"David\", \"Kahle\", email = \"david@kahle.io\", role = c(\"aut\", \"cph\", \"cre\"), comment = c(ORCID = \"0000-0002-9999-1558\")))", "Description": "Uses indicator species scores across binary partitions of\na sample set to detect congruence in taxon-specific changes of\nabundance and occurrence frequency along an environmental\ngradient as evidence of an ecological community threshold.\nRelevant references include Baker and King (2010)\n, King and Baker (2010)\n, and Baker and King (2013)\n.", "VignetteBuilder": "knitr", "License": "GPL-2", "LazyData": "TRUE", "RoxygenNote": "7.3.2", "Roxygen": "list(markdown = TRUE)", "Encoding": "UTF-8", "Repository": "https://dkahle.r-universe.dev", "Date/Publication": "2025-10-16 20:24:37 UTC", "RemoteUrl": "https://github.com/dkahle/titan2", "RemoteRef": "HEAD", "RemoteSha": "0d6c89eda0643c0b1abb74551871adead7a1134d", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-17 07:21:42 UTC", "User": "root" }, "Author": "Matthew E. Baker [aut, cph] (ORCID:\n),\nRyan S. King [aut, cph] (ORCID:\n),\nDavid Kahle [aut, cph, cre] (ORCID:\n)", "Maintainer": "David Kahle ", "MD5sum": "11c8e84ed9e634e8d73fd4e2be746943", "_user": "dkahle", "_type": "src", "_file": "TITAN2_2.4.4.tar.gz", "_fileid": "8a48833a49f3d7b27fbf8dc59b3f6fc00c5a8bbf742517bc2b9e1c0a22c9ed70", "_filesize": 5521236, "_sha256": "8a48833a49f3d7b27fbf8dc59b3f6fc00c5a8bbf742517bc2b9e1c0a22c9ed70", "_created": "2026-05-17T07:21:42.000Z", "_published": "2026-06-02T17:31:11.080Z", "_distro": "noble", "_jobs": [ { "job": 79132429845, "time": 148, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7040395687" }, { "job": 79132429992, "time": 141, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7040395030" }, { "job": 79132429766, "time": 139, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7040392631" }, { "job": 79132429813, "time": 178, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": 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"_exports": [ "getivz", "plot_cps", "plot_sumz", "plot_sumz_density", "plot_taxa", "plot_taxa_ridges", "plotCPs", "plotSumz", "plotTaxa", "titan" ], "_datasets": [ { "name": "glades.env", "title": "glades.env title", "object": "glades.env", "class": [ "data.frame" ], "fields": [ "TP.ugL" ], "rows": 126, "table": true, "tojson": true }, { "name": "glades.taxa", "title": "glades.taxa title", "object": "glades.taxa", "class": [ "data.frame" ], "fields": [ "ABLARHAM", "ACENTRIA", "ANOPHELE", "APEDELAS", "APHAOPAC", "ARRENSP1", "ATRICHOP", "BEARTRUN", "BELO.IMM", "BELOLUTA", "BELOTEST", "BEROSU.L", "BEZZSP1", "BEZZSP2", "BEZZSP3", "BRACGRAV", "BRATUNID", "CAECIDOT", "CAENDIMI", "CALANOID", "CALLFLOR", "CANDANNA", "CELIEPON", "CELIIMIT", "CELINA.L", "CERIODAP", "CERNOTIN", "CHIRSTIG", "CHMUSSP", "CHYDORID", "CLADOPEL", "CLADOTAN", "COLLESP1", "COLLESP2", "COLLESP4", "CORYINGE", "CORYSPD", "CRANGONY", "CURCULIO", "CYBIFIMB", "CYCLPOID", "CYPRBREV", "CYPROKEE", "CYTHALOS", "DAPHNSP1", 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"glades.env", "title": "glades.env title", "topics": [ "glades.env" ] }, { "page": "glades.taxa", "title": "glades.taxa title", "topics": [ "glades.taxa" ] }, { "page": "glades.titan", "title": "glades.titan title", "topics": [ "glades.titan" ] }, { "page": "indval", "title": "IndVal scores based on relative abundance across, and occurrence frequency within, groups", "topics": [ "indval", "indvals" ] }, { "page": "indvalp", "title": "Calculate permuted IndVal scores using a group matrix", "topics": [ "indvalp", "indvalps" ] }, { "page": "ivzsums", "title": "Sum IndVal z scores across taxa", "topics": [ "ivzsums", "ivzsums.f" ] }, { "page": "obs.summ", "title": "Summarizes results from TITAN's analaysis of observed data", "topics": [ "obs.summ" ] }, { "page": "permiv", "title": "Permutation of group membership for a single candidate partition", "topics": [ "permiv" ] }, { "page": "plot_sumz_density", "title": "Plot community level change", "topics": [ "plot_sumz_density" ] }, { "page": 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